| Rank | Team | Wins | Losses | Runs Scored | Runs Allowed | Bill James | Difference | Combined |
|---|---|---|---|---|---|---|---|---|
| 1 | Atlanta Braves | 101 | 61 | 907 | 740 | 96.829 | 4.171 | 122.116 |
| 2 | New York Yankees | 101 | 61 | 877 | 716 | 96.632 | 4.368 | 121.995 |
| 3 | San Francisco Giants | 100 | 61 | 755 | 638 | 92.988 | 7.012 | 119.868 |
| 4 | Seattle Mariners | 93 | 69 | 795 | 637 | 97.537 | -4.537 | 117.615 |
| 5 | Oakland Athletics | 96 | 66 | 768 | 643 | 94.27 | 1.73 | 117.450 |
| 6 | Boston Red Sox | 95 | 67 | 961 | 809 | 94.717 | 0.283 | 117.109 |
| 7 | Houston Astros | 87 | 75 | 805 | 677 | 94.122 | -7.122 | 111.804 |
| 8 | Florida Marlins | 91 | 71 | 751 | 692 | 87.195 | 3.805 | 109.997 |
| 9 | Philadelphia Phillies | 86 | 76 | 791 | 697 | 90.637 | -4.637 | 109.035 |
| 10 | Minnesota Twins | 90 | 72 | 801 | 758 | 85.276 | 4.724 | 108.195 |
| 11 | Chicago White Sox | 86 | 76 | 791 | 715 | 88.734 | -2.734 | 107.861 |
| 12 | St. Louis Cardinals | 85 | 77 | 876 | 796 | 88.557 | -3.557 | 107.134 |
| 13 | Chicago Cubs | 88 | 74 | 724 | 683 | 85.386 | 2.614 | 107.029 |
| 14 | Toronto Blue Jays | 86 | 76 | 894 | 826 | 87.299 | -1.299 | 106.975 |
| 15 | Arizona Diamondbacks | 84 | 78 | 717 | 685 | 84.433 | -0.433 | 103.971 |
| 16 | Los Angeles Dodgers | 85 | 77 | 574 | 556 | 83.253 | 1.747 | 103.860 |
| 17 | Montreal Expos | 83 | 79 | 711 | 716 | 80.47 | 2.53 | 100.907 |
| 18 | Kansas City Royals | 83 | 79 | 836 | 867 | 78.105 | 4.895 | 99.447 |
| 19 | Anaheim Angels | 77 | 85 | 736 | 743 | 80.277 | -3.277 | 97.084 |
| 20 | Colorado Rockies | 74 | 88 | 853 | 892 | 77.421 | -3.421 | 93.470 |
| 21 | Pittsburgh Pirates | 75 | 87 | 753 | 801 | 76.217 | -1.217 | 93.344 |
| 22 | Baltimore Orioles | 71 | 91 | 743 | 820 | 73.368 | -2.368 | 89.116 |
| 23 | Cleveland Indians | 68 | 94 | 699 | 778 | 72.85 | -4.85 | 86.944 |
| 24 | Texas Rangers | 71 | 91 | 826 | 969 | 68.212 | 2.788 | 85.933 |
| 25 | New York Mets | 66 | 95 | 642 | 754 | 68.558 | -2.558 | 83.577 |
| 26 | Milwaukee Brewers | 68 | 94 | 714 | 873 | 65.518 | 2.482 | 82.419 |
| 27 | Cincinnati Reds | 69 | 93 | 694 | 886 | 62.324 | 6.676 | 81.064 |
| 28 | Tampa Bay Devil Rays | 63 | 99 | 715 | 852 | 67.509 | -4.509 | 80.561 |
| 29 | San Diego Padres | 64 | 98 | 678 | 831 | 65.555 | -1.555 | 79.972 |
| 30 | Detroit Tigers | 43 | 119 | 591 | 928 | 48.245 | -5.245 | 56.324 |