| Rank | Team | Wins | Losses | Runs Scored | Runs Allowed | Bill James | Difference | Combined |
|---|---|---|---|---|---|---|---|---|
| 1 | New York Yankees | 114 | 48 | 965 | 656 | 109.94 | 4.06 | 138.234 |
| 2 | Atlanta Braves | 106 | 56 | 826 | 581 | 106.593 | -0.593 | 131.230 |
| 3 | Houston Astros | 102 | 60 | 874 | 620 | 106.422 | -4.422 | 128.655 |
| 4 | San Diego Padres | 98 | 64 | 749 | 635 | 93.282 | 4.718 | 118.075 |
| 5 | Boston Red Sox | 92 | 70 | 876 | 729 | 95.219 | -3.219 | 115.567 |
| 6 | San Francisco Giants | 89 | 74 | 845 | 739 | 91.933 | -2.933 | 111.002 |
| 7 | Cleveland Indians | 89 | 73 | 850 | 779 | 87.835 | 1.165 | 109.158 |
| 8 | New York Mets | 88 | 74 | 706 | 645 | 87.712 | 0.288 | 108.464 |
| 9 | Texas Rangers | 88 | 74 | 940 | 871 | 87.161 | 0.839 | 108.124 |
| 10 | Chicago Cubs | 90 | 73 | 831 | 792 | 85.286 | 4.714 | 107.537 |
| 11 | Toronto Blue Jays | 88 | 74 | 816 | 768 | 85.719 | 2.281 | 107.234 |
| 12 | St. Louis Cardinals | 83 | 79 | 810 | 782 | 83.744 | -0.744 | 102.928 |
| 13 | Anaheim Angels | 85 | 77 | 787 | 783 | 81.396 | 3.604 | 102.714 |
| 14 | Baltimore Orioles | 79 | 83 | 817 | 785 | 84.122 | -5.122 | 100.693 |
| 15 | Los Angeles Dodgers | 83 | 79 | 669 | 678 | 80.006 | 2.994 | 100.621 |
| 16 | Seattle Mariners | 76 | 85 | 859 | 855 | 80.87 | -4.87 | 97.435 |
| 17 | Cincinnati Reds | 77 | 85 | 750 | 760 | 79.982 | -2.982 | 96.902 |
| 18 | Colorado Rockies | 77 | 85 | 826 | 855 | 78.266 | -1.266 | 95.843 |
| 19 | Chicago White Sox | 80 | 82 | 861 | 931 | 74.703 | 5.297 | 95.495 |
| 20 | Oakland Athletics | 74 | 88 | 804 | 866 | 75.133 | -1.133 | 92.058 |
| 21 | Philadelphia Phillies | 75 | 87 | 713 | 808 | 71.412 | 3.588 | 90.378 |
| 22 | Milwaukee Brewers | 74 | 88 | 707 | 812 | 70.4 | 3.6 | 89.136 |
| 23 | Minnesota Twins | 70 | 92 | 734 | 818 | 72.636 | -2.636 | 88.047 |
| 24 | Pittsburgh Pirates | 69 | 93 | 650 | 718 | 73.587 | -4.587 | 88.017 |
| 25 | Kansas City Royals | 72 | 89 | 714 | 899 | 62.825 | 9.175 | 83.742 |
| 26 | Detroit Tigers | 65 | 97 | 722 | 863 | 67.232 | -2.232 | 81.625 |
| 27 | Montreal Expos | 65 | 97 | 644 | 783 | 66.383 | -1.383 | 81.101 |
| 28 | Arizona Diamondbacks | 65 | 97 | 665 | 812 | 65.925 | -0.925 | 80.818 |
| 29 | Tampa Bay Devil Rays | 63 | 99 | 620 | 751 | 66.818 | -3.818 | 80.134 |
| 30 | Florida Marlins | 54 | 108 | 667 | 923 | 56.456 | -2.456 | 68.183 |