| Rank | Team | Wins | Losses | Runs Scored | Runs Allowed | Bill James | Difference | Combined |
|---|---|---|---|---|---|---|---|---|
| 1 | New York Yankees | 103 | 58 | 897 | 697 | 99.727 | 3.273 | 125.918 |
| 2 | Anaheim Angels | 99 | 63 | 851 | 644 | 101.878 | -2.878 | 123.999 |
| 3 | Atlanta Braves | 101 | 59 | 708 | 565 | 96.141 | 4.859 | 123.213 |
| 4 | Oakland Athletics | 103 | 59 | 800 | 654 | 96.14 | 6.86 | 122.926 |
| 5 | San Francisco Giants | 95 | 66 | 783 | 616 | 98.166 | -3.166 | 119.979 |
| 6 | Arizona Diamondbacks | 98 | 64 | 819 | 674 | 95.761 | 2.239 | 119.605 |
| 7 | Boston Red Sox | 93 | 69 | 859 | 665 | 100.346 | -7.346 | 119.349 |
| 8 | St. Louis Cardinals | 97 | 65 | 787 | 648 | 95.56 | 1.44 | 118.864 |
| 9 | Seattle Mariners | 93 | 69 | 814 | 699 | 92.632 | 0.368 | 114.588 |
| 10 | Minnesota Twins | 94 | 67 | 768 | 712 | 86.25 | 7.75 | 111.957 |
| 11 | Los Angeles Dodgers | 92 | 70 | 713 | 643 | 88.678 | 3.322 | 111.529 |
| 12 | Houston Astros | 84 | 78 | 749 | 695 | 86.669 | -2.669 | 105.351 |
| 13 | Chicago White Sox | 81 | 81 | 856 | 798 | 86.527 | -5.527 | 103.412 |
| 14 | Montreal Expos | 83 | 79 | 735 | 718 | 82.779 | 0.221 | 102.332 |
| 15 | Philadelphia Phillies | 80 | 81 | 710 | 724 | 79.028 | 0.972 | 98.775 |
| 16 | Toronto Blue Jays | 78 | 84 | 813 | 828 | 79.561 | -1.561 | 97.260 |
| 17 | New York Mets | 75 | 86 | 690 | 703 | 79.105 | -4.105 | 95.717 |
| 18 | Florida Marlins | 79 | 83 | 699 | 763 | 74.344 | 4.656 | 94.657 |
| 19 | Cincinnati Reds | 78 | 84 | 709 | 774 | 74.308 | 3.692 | 94.018 |
| 20 | Texas Rangers | 72 | 90 | 843 | 882 | 77.391 | -5.391 | 92.217 |
| 21 | Cleveland Indians | 74 | 88 | 739 | 837 | 71.357 | 2.643 | 89.726 |
| 22 | Pittsburgh Pirates | 72 | 89 | 641 | 730 | 70.87 | 1.13 | 88.739 |
| 23 | Colorado Rockies | 73 | 89 | 778 | 898 | 69.714 | 3.286 | 88.095 |
| 24 | Chicago Cubs | 67 | 95 | 706 | 759 | 75.493 | -8.493 | 87.959 |
| 25 | Baltimore Orioles | 67 | 95 | 667 | 773 | 69.888 | -2.888 | 84.499 |
| 26 | San Diego Padres | 66 | 96 | 662 | 815 | 65.321 | 0.679 | 81.062 |
| 27 | Kansas City Royals | 62 | 100 | 737 | 891 | 66.263 | -4.263 | 79.175 |
| 28 | Milwaukee Brewers | 56 | 106 | 627 | 821 | 60.954 | -4.954 | 72.194 |
| 29 | Tampa Bay Devil Rays | 55 | 106 | 673 | 918 | 57.082 | -2.082 | 69.616 |
| 30 | Detroit Tigers | 55 | 106 | 575 | 864 | 51.179 | 3.821 | 65.950 |